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Zehtabi, Mojtaba, Akbarpour, Zahra, Valizadeh, Sepehr, Roosta, Yousef, Khamaneh, Amir Mahdi, Raeisi, Mortaza. (1401). Investigation and confirmation of differentially expressed miRNAs, as well as target gene prediction in papillary thyroid cancer, with a special emphasis on the autophagy signaling pathway. , 11(4), 173-181. doi: 10.22099/mbrc.2022.43844.1751
Mojtaba Zehtabi; Zahra Akbarpour; Sepehr Valizadeh; Yousef Roosta; Amir Mahdi Khamaneh; Mortaza Raeisi. "Investigation and confirmation of differentially expressed miRNAs, as well as target gene prediction in papillary thyroid cancer, with a special emphasis on the autophagy signaling pathway". , 11, 4, 1401, 173-181. doi: 10.22099/mbrc.2022.43844.1751
Zehtabi, Mojtaba, Akbarpour, Zahra, Valizadeh, Sepehr, Roosta, Yousef, Khamaneh, Amir Mahdi, Raeisi, Mortaza. (1401). 'Investigation and confirmation of differentially expressed miRNAs, as well as target gene prediction in papillary thyroid cancer, with a special emphasis on the autophagy signaling pathway', , 11(4), pp. 173-181. doi: 10.22099/mbrc.2022.43844.1751
Zehtabi, Mojtaba, Akbarpour, Zahra, Valizadeh, Sepehr, Roosta, Yousef, Khamaneh, Amir Mahdi, Raeisi, Mortaza. Investigation and confirmation of differentially expressed miRNAs, as well as target gene prediction in papillary thyroid cancer, with a special emphasis on the autophagy signaling pathway. , 1401; 11(4): 173-181. doi: 10.22099/mbrc.2022.43844.1751

Investigation and confirmation of differentially expressed miRNAs, as well as target gene prediction in papillary thyroid cancer, with a special emphasis on the autophagy signaling pathway

Molecular Biology Research Communications
دوره 11، شماره 4، 2022، صفحه 173-181    اصل مقاله (222.04 K)
نوع مقاله: Original article
شناسه دیجیتال (DOI): 10.22099/mbrc.2022.43844.1751
نویسندگان
Mojtaba Zehtabi1؛ Zahra Akbarpour2؛ Sepehr Valizadeh3؛ Yousef Roosta4؛ Amir Mahdi Khamaneh5؛ Mortaza Raeisi* 1
1Hematology and Oncology Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
2Rahat Breathe and Sleep Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
3Department of Internal Medicine, School of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran
4Department of Internal Medicine, School of Medicine, Imam Khomeini Hospital, Urmia University of Medical Sciences
5Department of Molecular Medicine, Faculty of Advanced Medical Sciences, Tabriz University of Medical Sciences, Tabriz, Iran
چکیده
Papillary thyroid carcinoma (PTC) is the most common endocrine cancer. However, the role of biomechanics in the development and progression of PTC is obscure. The microarray dataset GSE104005 was examined to identify important microRNAs (miRNAs or miRs) and their probable roles in the carcinogenesis of PTC. The gene expression omnibus (GEO) database was used to obtain the data. R was used to access the differentially expressed miRNAs (DEMs) and genes (DEGs). The multiMiR software was used to predict DEM targets. To validate the top DEMs and DEGs, thirty tissue samples were obtained from PTC patients who had their thyroids removed and compared with 30 normal samples. The total RNA content of the tumor and corresponding non-tumoral adjacent samples were purified and converted to cDNA. Expression levels of top dysregulated miRNAs and their target and predicted DEG were evaluated using the RT-qPCR method. miR-182 and miR-183 were top upregulated miRs and miR-30d was the most downregulated miR among DEMs. Furthermore, FOXO1 which was shown to be targeted by aforementioned miRNAs, was the most downregulated genes among other DEGs. 10 hub nodes were detected by PPI construction. PTEN was the hub node with highest score. The in vitro gene expression analysis was also showed the same expression pattern in tissues. Significant increase in miR-182-5p and miR-183-5p expressions, as well as a significant decrease in FOXO1 and miR-30d-5p expressions, suggest that PTC cells may tend to preserve their autophagy capability.
کلیدواژه‌ها
Papillary thyroid carcinoma؛ Autophagy؛ mRNA؛ miRNA
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