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Phylogenic analysis of serotype Asia1 foot-and-mouth disease virus from Sulaimani/Iraq using VP1 protein: heterogeneity with vaccine strain As1/Shamir/89 | ||
| Iranian Journal of Veterinary Research | ||
| مقاله 10، دوره 18، شماره 3 - شماره پیاپی 60، 2017، صفحه 212-215 اصل مقاله (283.13 K) | ||
| نوع مقاله: Short paper | ||
| شناسه دیجیتال (DOI): 10.22099/ijvr.2017.4226 | ||
| نویسندگان | ||
| M. O. Baba Sheikh* 1؛ P. M. A. Rashid2؛ A. S. Marouf2؛ Z. H. Raheem2؛ S. C. Janga3 | ||
| 1School of Informatics and Computing, Indiana University-Purdue University, Indianapolis, 46202, India; Department of Molecular Biology, Veterinary Laboratory Center, Sulaimani Veterinary Directorate, Sulaimani, Iraq | ||
| 2Department of Molecular Biology, Veterinary Laboratory Center, Sulaimani Veterinary Directorate, Sulaimani, Iraq | ||
| 3School of Informatics and Computing, Indiana University-Purdue University, Indianapolis, 46202, India; Center for Computational Biology and Bioinformatics, and Department of Medical and Molecular Genetics, Indiana University School of Medicine, India | ||
| چکیده | ||
| Foot-and-mouth disease virus (FMDV) serotypes O, A and Asia1 are responsible for a significant number of disease outbreaks in Iraq. The current study can be considered as the first molecular characterization of serotype Asia1 in Iraq. The present investigation reports the detection of serotype FMDV Asia1 from local farms in Sulaimani districts in 2012 and 2014 outbreaks. Phylogenetic analysis of the complete VP1 gene has shown that FMDV Asia1 field isolates were under genetic novel variant Sindh-08 (group VII) including PAK/iso/11 and TUR/13 strains. The VP1 protein sequence of circulatory FMDV Asia1 genotype showed heterogeneity of nine amino acid substitutions within the G-H loop with the vaccine strain As1/Shamir/89 (JF739177) that is currently used in vaccination program in Iraq. Our result indicated that differences in VP1 protein at G-H loop of the locally circulated FMDV serotype Asia1 strain may be a reason for current vaccination failure. | ||
| کلیدواژهها | ||
| Molecular genotyping؛ Phylogenetic analysis؛ viral evolution | ||
| مراجع | ||
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Acharya, R; Fry, E; Stuart, D; Fox, G; Rowlands, D and Brown, F (1989). The three-dimensional structure of foot-and-mouth disease virus at 2.9 Å resolution. Nature. 337: 709-716. Ansell, D; Samuel, A; Carpenter, W and Knowles, N (1994). Genetic relationships between foot-and-mouth disease type Asia 1 viruses. Epidemiol. Infect., 112: 213-224. Carrillo, C; Tulman, E; Delhon, G; Lu, Z; Carreno, A; Vagnozzi, A; Kutish, G and Rock, D (2005). Com-parative genomics of foot-and-mouth disease virus. J. Virol., 79: 6487-6504. Domingo, E; Escarmı́s, C; Baranowski, E; Ruiz-Jarabo, CM; Carrillo, E; Núñez, JI and Sobrino, F (2003). Evolution of foot-and-mouth disease virus. Virus Res., 91: 47-63. El-Kholy, AA; Soliman, HM; Helmy, NA and Rahman, AOA (2007). Genetic identification of the foot-and-mouth disease virus caused 2006 outbreak in Egypt. Arab. J. Biotech., 10: 193-206. Ferris, N and Donaldson, A (1992). The World Reference Jamal, SM and Belsham, GJ (2013). Foot-and-mouth disease: past, present and future. Vet. Res., 44: 116. Jamal, SM; Ferrari, G; Ahmed, S; Normann, P and Belsham, GJ (2011). Molecular characterization of serotype Asia-1 foot-and-mouth disease viruses in Pakistan and Afghanistan; emergence of a new genetic group and evidence for a novel recombinant virus. Infect. Genet. Evol., 11: 2049-2062. Jelokhani-Niaraki, S; Esmaelizad, M; Daliri, M; Vaez-Torshizi, R; Kamalzadeh, M and Lotfi, M (2010). Sequence and phylogenetic analysis of the non-structural 3A and 3B protein-coding regions of foot-and-mouth disease virus subtype A Iran 05. J. Vet. Sci., 11: 243-247. Li, P; Lu, Z; Bao, H; Li, D; King, DP; Sun, P; Bai, X; Cao, W; Gubbins, S and Chen, Y (2011). In-vitro and in-vivo phenotype of type Asia 1 foot-and-mouth disease viruses utilizing two non-RGD receptor recognition sites. BMC Microbiol., 11: 154. Logan, D; Abu-Ghazaleh, R; Blakemore, W; Curry, S; Jackson, T; King, A; Lea, S; Lewis, R; Newman, J and Parry, N (1993). Structure of a major immunogenic site on foot-and-mouth disease virus. Nature. 362: 566-568. Rashid, PMA; Marouf, AS; Raheem, ZH and Babashekh, MO (2014). Phylogenic analysis and molecular characterization of Slemani/Kurdistan/2013 foot and mouth disease virus shows circulation of new genotype in Iraq J. Zankoy Sulaimani. Part A. 16: 3. Reid, SM; Ferris, NP; Hutchings, GH; Samuel, AR and Knowles, NJ (2000). Primary diagnosis of foot-and-mouth disease by reverse transcription polymerase chain reaction. J. Virol. Methods. 89: 167-176. Ruiz-Jarabo, CM; Arias, A; Baranowski, E; Escarmís, C and Domingo, E (2000). Memory in viral quasispecies. J. Virol., 74: 3543-3547. Sabar, AA; Al-Banna, AS; Abdul-Rasoul, LM and Abood, BK (2012). Diagnostic study of FMD virus in different area in Iraq. In: Proceeding of the Eleventh Veterinary Scientific Conference. 55. Saeed, A; Khan, QM; Waheed, U; Arshad, M; Asif, M and Farooq, M (2011). RT-PCR evaluation for identification and sequence analysis of foot-and-mouth disease serotype O from 2006 to 2007 in Punjab, Pakistan. Comp. Immunol. Microbiol. Infect. Dis., 34: 95-101. Soleimanjahi, H; Sedeh, FM; Jalilian, A and Mahravani, H (2013). Sequence analysis of the foot and mouth disease virus type O/IRN/2007 VP1 gene from Iranian isolate. Folia Biol. (Praha), 59: 93-98. Tamura, K; Stecher, G; Peterson, D; Filipski, A and Kumar, S (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol., 30: 2725-2729. Thompson, JD; Higgins, DG and Gibson, TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22: 4673-4680. Zinnah, M; Islam, M; Rahman, M; Hossain, M; Bari, M; Haque, M; Khan, M and Islam, M (2012). Standardization of multiplex reverse transcription-polymerase chain reaction and typing of foot-and-mouth disease virus prevalent in Bangladesh. Bangladesh J. Vet. Med., 8: 149-155. | ||
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