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Karyological and molecular analysis of three endemic loaches (Actinopterygii: Cobitoidea) from Kor River basin, Iran | ||
| Molecular Biology Research Communications | ||
| مقاله 1، دوره 4، شماره 1، خرداد 2015، صفحه 1-13 اصل مقاله (1.69 M) | ||
| نوع مقاله: Original article | ||
| شناسه دیجیتال (DOI): 10.22099/mbrc.2015.2517 | ||
| نویسندگان | ||
| Hamid Reza Esmaeili* 1؛ Zeinab Piravar2؛ Mehrgan Ebrahimi2؛ Matthias F Geiger3 | ||
| 1Department of Biology, College of Sciences, Shiraz University | ||
| 2Shiraz University | ||
| 3Zoological Research Museum Alexander Koenig, Leibniz Institute for Animal Biodiversity, | ||
| چکیده | ||
| This study provides new data on chromosomal characteristics and DNA barcoding of three endemic loaches of Iran: spiny southern loach Cobitis linea (Heckel, 1847), Persian stream loach Oxynoemacheilus persa (Heckel, 1848) and Tongiorgi stream loach Oxynoemacheilus tongiorgii (Nalbant & Bianco, 1998). The chromosomes of these fishes were investigated by examining metaphase chromosome spreads obtained from epithelial gill and kidney cells. The diploid chromosome numbers of all three species were 2n=50. The karyotypes of C. linea consisted of 4M + 40SM + 6ST, NF=94; of O. persa by 20M + 22SM + 8ST, NF=90 and of O. tongiorgii by 18M + 24SM + 8ST, NF= 92. Sex chromosomes were cytologically indistinguishable in these loaches. Maximum likelihood-based estimation of the phylogenetic relationships based on the COI barcode region clearly separates the three Iranian loach species of the Kor River basin. All species distinguished by morphological characters were recovered as monophyletic clades by the COI barcodes. The obtained results could be used for population studies, management and conservation programs. | ||
| کلیدواژهها | ||
| Loaches؛ Phylogenetic relationships؛ COI barcode region؛ idiogram؛ Iran | ||
| مراجع | ||
|
1.Esmaeili HR, Coad BW, Gholamifard A, Nazari N, Teimory A. Annotated checklist of the freshwater fishes of Iran. Zoosyst Rossica 2010;19:361-386.
2.Esmaeili HR, Gholamifard A, Sayyadzadeh G, Parsi B, Mirghiyasi S, Ghasemian S. New record of the convict cichlid, Amatitlania nigrofasciata (Günther, 1867), from the Middle East (Actinopterygii: Cichlidae). Aqua Int J Ichthyol 2013;19:225-229.
3.EsmaeilI HR, Masoudi M, Mehraban HR. Assignment of Acanthopagrus populations in the Persian Gulf drainage system of Iran to Acanthopagrus arabicus Iwatsuki, 2013 (Perciformes: Sparidae). Iran J Ichthyol 2014;1:23-28.
4.Esmaeili HR, Teimory A, Owfi F, Abbasi K, Coad BW. Alien and invasive freshwater fish species in Iran: Diversity, environmental impacts and management. Iran J Ichthyol 2014;1:62-72.
5.Esmaeili HR, Sayyadzadeh G, Özuluğ M, Geiger M, Freyhof J. Three new species of Turcinoemacheilus from Iran and Turkey (Teleostei: Nemacheilidae). Ichthyol Explor Fres 2014;24:257-273.
6.Esmaeili HR, Teimori A, Gholami Z, Reichenbacher B. Two new species of the tooth-carp Aphanius (Teleostei: Cyprinodontidae) and the evolutionary history of the Iranian inland and inland-related Aphanius species. Zootaxa 2014;3786:246-268.
7.Gholami Z, Esmaeili HR, Erpenbeck D, Reichenbacher B. Phylogenetic analysis of Aphanius from the endorheic Kor River Basin in the Zagros Mountains, South-western Iran (Teleostei: Cyprinodontiformes: Cyprinodontidae). J Zool Syst Evol Res 2014;52:130-141.
8.Teimori A, Esmaeili HR, Erpenbeck D, Reichenbacher B. A new and unique species of the genus Aphanius Nardo, 1827 (Teleostei: Cyprinodontidae) from Southern Iran: A case of regressive evolution. Zool Anz 2014;253:327-337.
9.Esmaeili HR, Piravar Z. First report on karyotype of Cyprinion tenuiradius Heckel, 1849 (Pisces: Cyprinidae), from Southwest of Iran. Zool Middle East 2006;39:75-80.
10.Esmaeili HR, Piravar Z, Ebrahimi M. First karyological analysis of Iranian cichlid fish, Iranocichla hormuzensis Coad, 1982 (Perciformes, Cichlidae) from southern Iran. J Appl Anim Res 2006;30:77-80.
11.Esmaeili HR, Piravar Z, Shiva AH. Karyological analysis of two endemic tooth-carps, Aphanius persicus and A. sophiae (Pisces: Cyprinodontidae) from Southwest of Iran. Turk J Zool 2007;31:64-74.
12.Nasri M, Keivany Y, Dorafshan S. First karyological analysis of smallmouth lotak, Cyprinion kais Heckel, 1843, an endemic Cyprinid fish from the Tigris–Euphrates Basin. Ital J Zool 2010;77:272-276.
13.Coad BW. Freshwater fishes of Iran 2014.www.briancoad.com.
14.Nelson JS. Fishes of the world 2006. New Jersey. John Wiley & Sons, Inc.
15. Bohlen J, Šlechtov V. A new genus and two new species of loaches (Teleostei: Nemacheilidae) from Myanmar. Ichthyol Explor Fres 2011;22:1-10.
16.Nalbant TT, Bianco PG. The loaches of Iran and adjacent regions with description of six new species (Cobitoidea). Ital J Zool 1998;65:Supplement, 109-123.
17.Freyhof J, Erk’akan F, Özeren C, Perdices A. An overview of the western Palaearctic loach genus Oxynoemacheilus (Teleostei: Nemacheilidae). Ichthyol Explor Fres 2011;22:301-312.
18.Golzarianpour K, Abdoli A, Freyhof J. Oxynoemacheilus kiabii, a new loach from Karkheh River drainage, Iran (Teleostei:Nemacheilidae). Ichthyol Explor Fres 2011; 22:201-208.
19.Freyhof J, Esmaeili HR, Sayyadzadeh G, Geiger M. Review of the crested loaches of the genus Paracobitis Bleeker, 1868 from Iran and Iraq with the description of four new species (Teleostei: Nemacheilidae). Ichthyol Explor Fres 2014;25:11-38.
20.Galetti PM, Aguliar CT, Molina WF. An overview of marine fish cytogenetics. Hydrobiologia 2000;420:55-62.
21.Ozouf-Costaz C, Foresti F. Fish cytogenetic research: advances, application and perspectives. Neth J Zool 1992;42:277-290.
22.Arai R. Fish Karyotypes: A Check List. Springer 2011. Japan
23.Geiger MF, Herder F, Monaghan MT. Spatial heterogeneity in the Mediterranean biodiversity hotspot affects barcoding accuracy of its freshwater fishes. Mol Ecol Resour 2014;14:1210-1221.
24.Al-Sabti K. Handbook of Genetoxic Effects and Fish Chromosomes. Ljubljana 1991. Jozef Stefan Institute.
25.Wu C, Ye Y, Chen R. Genome manipulation in carp (Cyprinus carpio L.). Aquaculture 1986;54:57-61.
26.Diter A, Quillet E, Chourrout D. Suppression of first egg mitosis induced by heat shocks in the rainbow trout. J Fish Biol 1993;42:777-786.
27.Uwa H. Karyotype evolution and geographical distribution in the ricefish, genus Oryzias (Oryziidae): Uyeno TR, Arai T, Taniuchi K Matsuura. Eds. Indo-Pacific Fish Biology: Proceeding of the Second International Conference on Indo-Pacific Fishes Ichthyological Society of Japan, Tokyo 1986; 867-876.
28.Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric positions on chromosomes. Hereditas 1964;52:201-202.
29.Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN. Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes 2007;7:544-548.
30.Biomatters. 2013. Geneious Pro. Available: http://www.geneious.com
31.Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32:1792-1797.
32.Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998;14:817-818.
33.Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol;2011;28: 2731–2739.
34.Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993;10:512-526.
35.Moyle PB, Cech JJ. 2004. Fishes, an introduction to ichthyology. Fifth Edition. New Jersey: Prentice Hall, Englewood cliffs.
36.Ozouf-Costaz C, Pisano E, Thaeron C, Hureau GC. Antarctic fish chromosome banding: significance for evolutionary studies. Cybium 1997;21:399-409.
37.Fontana F, Rossi R, Lanfredi M, Arlati G, Bronzi P. Cytogenetic chracterictization of cell lines from three sturgeon species. Caryologia 1997;50:91-95.
38.Klinkhardt M, Tesche M, Greven H. Database of fish chromosomes. Westarp Wissenschaften 1995. www.fishbase.org.
39.Arkhipchuk VV. 1999. Chromosome database. Database of Dr. Victor Arkhipchuk. www.fishbase.org.
40.Nakabo T. 2002. Fishes of Japan with Pictorial Keys to the Species, English edition I. Japan: Tokai University Press.
41.Khuda-Bukhsh AR, Chanda T, Barat A. Karyomorphology and evolution in some Indian hillstream fishes with particular reference to polyploidy in some species. In: Uyeno TR, Arai T, Taniuchi KM. Editors. Indo-Pacific Fish Biology: Proceeding of the Second International Conference on Indo-Pacific Fishes Ichthyological Society of Japan, Tokyo 1986. pp.886-898.
42.Taylor KM. The chromosomes of some lower chordates. Chromosoma 1967;21: 181-188.
43.Vasil'ev VP. Chromosome numbers in fish-like vertebrates and fish. J Ichthyol 1980;20:1-38.
44.Rishi KK, Haobam MS. Karyotypic. Study on two fresh water mud eels. In: Manna GK, Sinha U. editors. Prospective in Cytology and Genetics. Proc. 4th All Indian Congress of Genetics. India 1984. pp. 429-432.
45.Kitada J, Tagawa M. On the chromosomes of two species of Cyclostomata. La Kromosomo 1973;91:2913-2916. [In Japanese with English summary].
46.Kottelat M. Conspectus cobitidum: an inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei). Raffles B Zool 2012;Suppl. 26:1–199.
47.Stoumboudi MT, Kottelat M, Barbieri M. The fishes of the inland waters of Lesbos Island, Greece. Ichthyol Explor Freshwater 2006;17:129-146.
48.Prokofiev AM. Problems of the classification and phylogeny of nemacheiline loaches of the group lacking the pre-ethmoid I (Cypriniformes: Balitoridae: Nemacheilinae). J Ichthyol 2009;49:874-898. | ||
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